Protein Info for GFF1518 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: HTH-type transcriptional regulator malT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1070 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF03704: BTAD" amino acids 114 to 234 (121 residues), 34.3 bits, see alignment E=4.3e-12 PF13191: AAA_16" amino acids 249 to 411 (163 residues), 66.8 bits, see alignment E=5.3e-22 PF13401: AAA_22" amino acids 270 to 404 (135 residues), 33.4 bits, see alignment E=7.8e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1070 amino acids)

>GFF1518 HTH-type transcriptional regulator malT (Hydrogenophaga sp. GW460-11-11-14-LB1)
MALAHAIAAPEAAGQLAVCLLGAFSVSIDGLALAADRWPSLRSAQLVQLLSLAPQRRLAR
ERVIDALWPQLEPEAGAANLRKAVHHVRQALGRHDSVVQQGGELVLWPHGQVRVDAERFE
QLAQAALGSANAQACAQAAAACAGELLPGSAYEAWTESTRERLHALFIALLRGSAQWERL
ARLEPTDEPAHRELMAHELAQGNRAAAVRWYALLSEALQRELGVAPSRDTQALYGRCVEG
MQPASPISIGREWPRAQALAWLEMGEAKRPGGIVLRGPAGIGKTALCRQIADQGRERGWT
VLAVDAAQPRHTYAVIATLIERLLMADRGLLDGIGAPARSVLAQLSPLAAPAAALVSPLG
RHQVIGALRRLLLAASGGSKALVVVDDAHLIDDADADVLAHLVSAGPPVCVLLAMRAPVP
GSALARGVARLVGSGAMQALDLQPLDGDDLRRLVAQTAPCTLSEENLAHIVRVAEGNPFA
AIELARCAAPQGARLPRNVAEAILARLCDVPEAVLASLTWMALAGDAFDATVATALAPDA
EARTFAALDLALTAGALVLTDSGYRFRHELVRQALIEQIPPHLRLKMHRQAAQRLSELDA
PPALVAQHWLDGGHPREAVPYLLAAARDAVRLAAFSDALRHLRPVLAVEPGHAEALRLQA
EALDAMGDPAAVGAYRAAALAAGEPLSHDLRAKGALAMIKQGDPKGALEALVGVKPTSVD
GRLSEALTYCGAAALGATDAAMGTRKAAEARRLALQAGDAAAIVTASWAQAAAAHARGEL
QQSVWADLQDTSQLPHLAVRVFDGQLCILQRFLYGARPYPEVIAFAQGLAAEAVRLGAAR
GHAFGVTLQGEAELLAGDLNAAEEHLQQGVRLHHAIGGATGEAFSMQRLAEVAMHRGQYE
EARALIAGALDLARQSDIGFHLLDRIYGTRLRLARDPGAALHALEDAREAVRGPLETCPG
CRITFAVPAAIAAARAGRLDLAEEYTGQSAYLADVVMRLPAWHAAHGEVLAHMAIARGEG
PQVAASRFAEAAQRYRGSGHPIDAQRCERRAQVADAQTNTTLSQAATKSR