Protein Info for GFF1506 in Sphingobium sp. HT1-2

Annotation: FIG022606: AAA ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 TIGR03015: putative secretion ATPase, PEP-CTERM locus subfamily" amino acids 1 to 267 (267 residues), 353.7 bits, see alignment E=3.4e-110 PF13401: AAA_22" amino acids 42 to 170 (129 residues), 80.9 bits, see alignment E=5.2e-27

Best Hits

KEGG orthology group: None (inferred from 76% identity to sch:Sphch_1234)

Predicted SEED Role

"FIG022606: AAA ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (406 amino acids)

>GFF1506 FIG022606: AAA ATPase (Sphingobium sp. HT1-2)
MYDQFYGLQGRPFQLTPDPHFYFESTTHRKALSYLGYGLAQGEGFIVITGDIGAGKTTLV
GHLMSTIDPARLTATKIVSTQVEGDDMLRLAAQSFGLATDGVAKAQILRQIEAYLQGQAR
AGRRSLLIVDEAQNLPVSAIEELRMLSNFQLGGQSLLQIFLLGQPEFRDLVRSPELEQLR
QRVIATHHLDPMLPQEVEPYISHRLTLVGWTGNPYFTDDALDAIYAATGGVPRRINALVS
RVLLLGALEQLTEIDGQAVQAVIEDMGVDEDVSAEPIAPSVLDTAGETAPEPIAPAEPVA
AAPAPQAVAWQAPAQPDLVSPAVHEEIEALRAEIAALRAIQNHASYAAPTVDPEALKGCF
ALIEERLSGLEFRVEEQDAALRRVLTLLVDWVERDERAADPERNAA