Protein Info for GFF1502 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 transmembrane" amino acids 26 to 48 (23 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 109 to 132 (24 residues), see Phobius details amino acids 138 to 159 (22 residues), see Phobius details amino acids 189 to 214 (26 residues), see Phobius details amino acids 234 to 256 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 88 to 260 (173 residues), 86.1 bits, see alignment E=1.3e-28

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 74% identity to azc:AZC_2448)

Predicted SEED Role

"Hydroxymethylpyrimidine ABC transporter, transmembrane component" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>GFF1502 hypothetical protein (Xanthobacter sp. DMC5)
VSAATLQSPAARPGTSPLLTALFRAVRGLAILLAVLAAVEGLVVVLNVKPWYVPRPTLVL
NAILATPEPYVQGFLRTLTETLMGFTSGAIFGVGIAIVFFRARVLRELIFPVFVVSQTIP
VIAFGALVVLWFGNTLIAKAAISFYLTFFPVTVNALLGLESVDPRQEALMRSFGASRFQL
LTRLQLPAALPQIFVALRLASALSLVGAIVGEWFGDTVGLGVLLLQGMYNENVVAIWAAI
AMCALLGTGFYAVVAAAERALVFWGAEQ