Protein Info for GFF1483 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 14 to 33 (20 residues), see Phobius details amino acids 53 to 68 (16 residues), see Phobius details amino acids 102 to 129 (28 residues), see Phobius details amino acids 141 to 169 (29 residues), see Phobius details amino acids 180 to 202 (23 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details amino acids 272 to 291 (20 residues), see Phobius details amino acids 303 to 333 (31 residues), see Phobius details amino acids 345 to 374 (30 residues), see Phobius details PF09594: GT87" amino acids 93 to 314 (222 residues), 82.7 bits, see alignment E=1.8e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>GFF1483 hypothetical protein (Sphingobium sp. HT1-2)
MPAERPILLPPRPWNWFMWVAATFLGVFLILSDLRQLDGLHLPEARLLIGRDFLNVWSGG
TLALTGQLERLYDFQAYMNWQARLFGPLEMLNYSYPPHSLFLAMPFALFPYPVALALWTG
LGAIFFAWAARPYIPAGLSPWLALLTPAAIVNIWVGHYGFVIGGLWLLFFAQLRHAPVRA
GLVAGLLTLKPHLGLLIALTLVHRRAFRAIGAAIAVTLGLIGLSGLAFGFDLWPTWLTDT
SALQTRIMTAEGEKFYFFMMTSAYVALREGPYWLPLTAQTLFAGSALYLVWRARHCTVHQ
LAFITATATALITPYIFNYDLTVCCLGFAILLYGQWHALHRKERIILWMAFAAPLLVMAW
NLIAPIALLAGLVVQIRCYTGISYADLLLPAPLKRRWIDNPVPTS