Protein Info for PS417_00745 in Pseudomonas simiae WCS417

Annotation: outer membrane N-deacetylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 665 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR03938: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB" amino acids 46 to 661 (616 residues), 895.6 bits, see alignment E=7.3e-274 PF01522: Polysacc_deac_1" amino acids 100 to 267 (168 residues), 74.4 bits, see alignment E=7.9e-25 PF14883: GHL13" amino acids 315 to 641 (327 residues), 485.2 bits, see alignment E=9e-150

Best Hits

KEGG orthology group: K11931, biofilm PGA synthesis lipoprotein PgaB [EC: 3.-.-.-] (inferred from 96% identity to pfs:PFLU0144)

Predicted SEED Role

"Biofilm PGA synthesis deacetylase PgaB (EC 3.-)"

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.-.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U381 at UniProt or InterPro

Protein Sequence (665 amino acids)

>PS417_00745 outer membrane N-deacetylase (Pseudomonas simiae WCS417)
MTVLSRCLLILGVMLASACAQQPAPFTPPAERPTPANEAPWPKNHFLGIAYHDVEDRDPD
QAVVAVRTERLIEQLAWLRENGYKAVSVDQILAARNGGPELPPKAIMLSFDDGYSSFYTR
VMPILRAYHWPALLAPVGYWIDTPMNQPVDFAGQPRPRGEFLTWQQIREVSQSGLVEIAA
HTDNSHKGILANPQGNLEPAATSLRFDPATGRYETQAQFEARMRADVAAISNKIQTVTGK
KPRVWVWPYGAAKGTSLAIIGEQGYQMALTLEDGLDSSSDLMNSPRFLVASDPDGEHFAN
SMVAVQAKAPMRVLHVDLDNVYDPDPAQQARNLDQLVQRVVDMGAGTVFLQAFADPKGDG
LVHELYFPNRHLPVRADLFNRVSWQLHTRAHASVYAWMPVLSFALDPKLPRVTRWDPETG
KVGLDPDQYKRLSPFDPQVRKIIGEIYEDLARNNAIDGVLYHDDAVFNDFEDASPAALKA
YAAAGLPATIEALRADPAVMQRWTRFKSRYLIDFTKELTAKVRAIGGPQVQTARNIFAEP
MLNPGSEAWFAQNLDDFLQTYDWTAPMAMPLMEGQEYSNSNAWLEKLVATVKARPGAMER
TVFELQAKDWRTKAAPDIDSAQMAEWMGVLKRQGVTSFGYYPDNFLENSPDLKTVRPALS
NQWNP