Protein Info for GFF1479 in Sphingobium sp. HT1-2

Annotation: Transcriptional regulator, AcrR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 228 PF00440: TetR_N" amino acids 37 to 82 (46 residues), 54.2 bits, see alignment 9.8e-19 PF14246: TetR_C_7" amino acids 105 to 215 (111 residues), 33.3 bits, see alignment E=4.3e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (228 amino acids)

>GFF1479 Transcriptional regulator, AcrR family (Sphingobium sp. HT1-2)
MAADTSQRADGSGSDGSARPTGRPSREAAEQIEATMLDAALATFIEAGFQGASMEAIARR
AGVTKRTLYRRARTKSDLFVEVVERLARQSGMPNLARVEAGPLEQRLQAAGEILLGWLLN
PHAIALYRMIVAEAARQPGLALSVDGPFQRASTAIAAILAEDGARPAETVRLGADMFVRL
VAGEALDRAAQGIEPAGVSDRTHARAMAAIAFFLAGWRSWPASTPYFP