Protein Info for GFF1472 in Sphingobium sp. HT1-2

Annotation: Pirin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 PF02678: Pirin" amino acids 18 to 125 (108 residues), 123 bits, see alignment E=8.4e-40 PF17954: Pirin_C_2" amino acids 153 to 237 (85 residues), 65.8 bits, see alignment E=5e-22

Best Hits

Swiss-Prot: 71% identical to Y1473_CAUVC: Pirin-like protein CC_1473 (CC_1473) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K06911, (no description) (inferred from 91% identity to sjp:SJA_C1-15660)

Predicted SEED Role

"Pirin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (239 amino acids)

>GFF1472 Pirin (Sphingobium sp. HT1-2)
MSTTTASRIERRPFASLGHADHGWLNARHHFSFANYYDPARMGWGAIRVWNDDEIGPRSG
FPPHPHSDMEIITYVRTGAITHQDSLGNKGRTEAGDVQVMSAGTGIRHAEYNLEDETTTL
FQIWVIPRSVGGSPSWGAKPFPKGDRSGKLVVLASGHDEDKEALRIRADARLLGGTIKAG
DSVTYEAGEGRHLYLVPATGRIEIDGQTFEARDGAAIIGGAPITITAVEDSEIVLVDSE