Protein Info for PS417_00740 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 826 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details TIGR03939: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA" amino acids 19 to 826 (808 residues), 921 bits, see alignment E=3.2e-281 PF14559: TPR_19" amino acids 113 to 173 (61 residues), 28.9 bits, see alignment 1.2e-10 PF21197: PgaA_barrel" amino acids 526 to 826 (301 residues), 392.4 bits, see alignment E=1.2e-121

Best Hits

KEGG orthology group: K11935, biofilm PGA synthesis protein PgaA (inferred from 92% identity to pfs:PFLU0143)

Predicted SEED Role

"Biofilm PGA outer membrane secretin PgaA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1TMM1 at UniProt or InterPro

Protein Sequence (826 amino acids)

>PS417_00740 membrane protein (Pseudomonas simiae WCS417)
MLRHIPLSASGRLRLLIGVTLCSQLLMPTFAMADPAYDALIIQARNGNFTPALTQLRQLP
AERQTPGQISDHLVIAGWAGQDAEVLKVYEAQGQNRNLTAQALATVARTYRNQKQWARAE
AVYRKALLREPNNVDLQLGLALTQADGGKTNEAVQRARALVAGKPDDPNRRMALGYALTR
AGLQYDALHEFDQAFIRAGDKPEVAREYIVALQKARLPEPALRLSAQRPGLVDPVTQRRL
EGDLAAERVRMAEFATRTEKERYVIADRALQGYDQLLARWTPDPTAKDDVVRWRIDRLGA
LKARARTAEVIREYETLQAEGVQLPTYAVRWVAASYLDQRLPEKAAPLYRQALSAPDADV
GDRVEDSTALFYALLENDQVDEARAVAKNLADSQKPRVELKGLPIGNPNDEWMDAQQLAA
QAGTYGSDLPSSEKALEELVGKAPGSIGLRLAQAEMYRARDWPRRAERSLKETETQSPRD
IGLEMSQGFTALDLQEWRQLDILTDDVVARNPDNRQVQRLKRLRDVHDMAELRVEAYTGK
SFGGGNNGDAGAVSGSRDWGIESRLYTPPIDEDWRLFAGAGYATADFEEGTGHHRWQVVG
VERRTRDMTIEAEVSNHSYGDGSKQGAAVSIARDINDNWQYGGSLGYLLSTTPLRALNDG
ITANGGSGFIRWRANESREWKLTLSPSHFSDGNDRFEALLSGREGLYSSPKVQVDLGLEV
GASRNSKEDTVYFNPKSDFTVLPVLNINHVLYHRYETQWSQQFQVGAGTYSQQDYSTGGI
GLVGYGQRYRWNDVLEAGANLSLISRPYDGDRERDLRLLVDLTYRF