Protein Info for GFF1468 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 564 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR04486: thiosulfohydrolase SoxB" amino acids 3 to 563 (561 residues), 852.6 bits, see alignment E=5.3e-261 PF02872: 5_nucleotid_C" amino acids 396 to 534 (139 residues), 61.9 bits, see alignment E=8.2e-21

Best Hits

KEGG orthology group: None (inferred from 88% identity to xau:Xaut_1519)

MetaCyc: 58% identical to SoxB (Paracoccus pantotrophus)
RXN-11952 [EC: 3.1.6.20]; 3.1.6.20 [EC: 3.1.6.20]; SOXA-FDENIT-RXN [EC: 3.1.6.20]

Predicted SEED Role

"Sulfur oxidation protein SoxB" in subsystem Sulfur oxidation

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.6.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (564 amino acids)

>GFF1468 hypothetical protein (Xanthobacter sp. DMC5)
MISRRDFLSAGTALAGLLAASGTGLAQAVGAQALSQADLLKFGNVGTFTILHITDIHAQL
VPLYFREPSTNLGVGDARGVPPHLTDTAFLKYFGLKAGTRDAYSLTSEDFTQLARTYGRM
GGVDRIATLVKAIRAERGADKVLLLDGGDGLQGSWSSLKTQGEDMVKVFSALGTDAMVGH
WEFTYGADRVTEIKDKAPFAFLAQNVRSAEWQEPVFEAAKTFEKGGAKVAVIGQAFPRTP
ISNPRWMIPDWEFGIREEDMQKQVDAARSGGADAVVVLSHNGFDVDRKMASRVSGIDVIL
TAHTHDAMPRVVEVGKTLLVATGSHGKFVSRLDLDVKDRKVTGYRFQLIPVFADVIAPDP
EMAKLVTDIRAPYAKDLSRELGRADSLLYRRGNFNGTFDDMICDAIMKERDAEIALSPGF
RWGGTLLPGDPITFDAVANATAITYPACYRNTMTGRQLKEVLEDVADNIFNPDPYFQGGG
DMVRVGGVGYAIDVSKGPGQRISDLTFLKTGKPLEADKAYTVAGWASVAQNVEGPPVWEL
VERYVTDTKSVKIAPNASVKVTGA