Protein Info for GFF1467 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 24 to 46 (23 residues), see Phobius details TIGR04555: sulfite dehydrogenase" amino acids 21 to 434 (414 residues), 621.7 bits, see alignment E=2.8e-191 PF00174: Oxidored_molyb" amino acids 123 to 286 (164 residues), 179 bits, see alignment E=5.9e-57 PF03404: Mo-co_dimer" amino acids 307 to 421 (115 residues), 72.7 bits, see alignment E=3.2e-24

Best Hits

KEGG orthology group: None (inferred from 86% identity to xau:Xaut_1518)

Predicted SEED Role

"Sulfur oxidation molybdopterin C protein" in subsystem Sulfur oxidation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (437 amino acids)

>GFF1467 hypothetical protein (Xanthobacter sp. DMC5)
MSDTSLPPTERAAGATPSLSRRRFLNLAGIGAGAVVAGGGAALAAPAAGTPDPNIVPVPD
WTKTLGAPVNENPYGKPSVFEKDVVRREVTWLTASSQSSVSFTPLYALDSVITPNGLCFV
RHHGGQAEIDPDKYRLMIHGLVDKPLVFTLEDLKRMPGRVNRAYFLECAANSGMEWRGAQ
LNGCQFTHGMIHNLFYTGVPLKTLLDMAGVNPKGKWVLAEGADAAVMTRSIPLEKAMNDC
LVAFGMNGEALRPEQGYPVRLVVPGWEGNMWVKWLRRLKVGDQPWQQREETSKYTDLLAD
GRSRRFTFVMDAKSVVTSPSPQAPLKHKGPNVLSGIAWSGRGTISRVDVSLDGGRNWTTA
RIDGPALPMSMTRFYLDFDWAGQELMVQSRAMDDTGYVQPTKQELRAIRGTNSIYHNNGI
QTWLVRSNGETENVEVG