Protein Info for GFF146 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 44 to 63 (20 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 50% identity to rpt:Rpal_2490)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (189 amino acids)

>GFF146 hypothetical protein (Xanthobacter sp. DMC5)
MGTAAFLFAIWGLLLTPGPTNTLLALSGTSVGLGRSLRLMPAELAAYLMVTVPLATAGAD
LLAGAPLAAVAVRLAAAGWIAYLAARLWRLPAPGQAAGEVTLVRVFTTTLLNPKALIIGL
TLLPRGSEPDFLTHLALFAGSVLAVATIWAGGGALLKRGDGAPRLLYRRAAACWLAFLAA
ALVGAAIRA