Protein Info for GFF1454 in Xanthobacter sp. DMC5

Annotation: Glucosamine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1093 TIGR02456: trehalose synthase" amino acids 21 to 556 (536 residues), 950.9 bits, see alignment E=1.9e-290 PF00128: Alpha-amylase" amino acids 29 to 331 (303 residues), 247.8 bits, see alignment E=4.1e-77 amino acids 359 to 474 (116 residues), 56.5 bits, see alignment E=4.3e-19 PF16657: Malt_amylase_C" amino acids 478 to 553 (76 residues), 107.5 bits, see alignment 4.2e-35 TIGR02457: putative maltokinase" amino acids 572 to 1084 (513 residues), 521.1 bits, see alignment E=3.4e-160 PF18085: Mak_N_cap" amino acids 605 to 690 (86 residues), 36.2 bits, see alignment 1.5e-12

Best Hits

Predicted SEED Role

"Trehalose synthase (EC 5.4.99.16)" in subsystem Trehalose Biosynthesis (EC 5.4.99.16)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 5.4.99.16

Use Curated BLAST to search for 5.4.99.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1093 amino acids)

>GFF1454 Glucosamine kinase (Xanthobacter sp. DMC5)
MNVHSAPASTATSTTGDDALWYKDAVIYQLHVKSFFDANDDGIGDFAGLISKLDYIASLG
VTCIWLLPFYPSPRRDDGYDISEYKNVHPDYGTMADARRFIREAHARGMRVITELVINHT
SDQHPWFQRARRAKPGSAHRNFYVWSDNDQAYAGTRIIFLDTEKSNWTWDPVAGAYFWHR
FYSHQPDLNFDNPAVLKAVLGVMRFWLDLGVDGLRLDAVPYLVEREGTSNENLPETHAIL
KAIRAELDAAYPDRLLLAEANMWPEDTQQYFGDGDECHMAFHFPLMPRMYMAIAQEDRFP
ITDIMRQTPDIPENCQWAIFLRNHDELTLEMVTDSERDYLWNFYAADRRARINLGIRRRL
APLLQRDRRRVELMKSLLLSMPGTPVMYYGDEIGMGDNIFLGDRDGVRTPMQWSPDRNGG
FSKADPASLVLPPIQDPLYGFQAINVEAQSRDTHSLLNWTRKLLSVRRAHPAFGRGTLRF
LYPKNRKVFAYLREHQGETLLCVANLSRSPQAVELDLSEFSGRIPLELLGSSPFPPIGQL
TYLLTLPPYGFYWFLLATDAQSPDWHTPAPEAMPEYLTFVLKGAPEEMITAAHRKSFEAD
VLPAYLPKRRWFAGKGDALQSARVAMTARLGKKRERAFVMVETKRASGKDLYQLPVGISW
DDEAGQSLPQQLALSRVRRGRRTGYLTDAFALPEFAADVMDLIARDGEVASSQGRIVFRK
TPAFEGAPLTEGAPVRFLSAEQSNSSLIYGDKAILKLFRRITPGIHPEAEMSRALTERGF
ANTATLLGEIVHEPDGGAPQVLAVLQAYVAGEGDAWTFTLSFLQRAADEVGHEDIQQDDL
IAPYLRFAEHLGLRLGEMHRLLAAETDDPAFAPEPAGGTALEAWRSRIGGRMDAALNGLA
ARLDTLAERDREKASCILDRRAAIAAEIERLVATGEGARLHRIHGDFHLGQVLVAQGDAV
IIDFEGEPALPVEARRAKDSGWRDVAGILRSLDYAVRARRRPSQAAGDANFGRLADLFQA
RVPQTLLDAYRKGAGIDARGAEAERDDALLRLFLLEKAAYEVTYEMDNRPDWLPIALGSL
ARLVADLPPDAGA