Protein Info for GFF1441 in Xanthobacter sp. DMC5

Annotation: Galactose/methyl galactoside import ATP-binding protein MglA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 516 PF00005: ABC_tran" amino acids 40 to 191 (152 residues), 94.6 bits, see alignment E=8.3e-31 amino acids 292 to 444 (153 residues), 60 bits, see alignment E=4e-20

Best Hits

Swiss-Prot: 49% identical to RGMG3_BURCM: Putative ribose/galactose/methyl galactoside import ATP-binding protein 3 (Bamb_4447) from Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)

KEGG orthology group: K10441, ribose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 92% identity to azc:AZC_1416)

Predicted SEED Role

"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (516 amino acids)

>GFF1441 Galactose/methyl galactoside import ATP-binding protein MglA (Xanthobacter sp. DMC5)
MRAVMATTPRLELAAPPAVPGTPILELKGISKTFPGVKALDDVSFAVWPGEVHMLLGENG
AGKSSLMKVLCGAYQADAGEYFHNGEKVEIRSPADARRFGIAVIFQEFSLVPYLDVAQNI
FLGREFPSRIPGLLDRRRLYREAQKVLDLIGLEVDPRTKVHQLGVAQQQMVEIGKALSQD
ARILVMDEPTAALSDRETERLFEVMRQLQAKGVALVYISHRMAEVFALGDRITVLRDGKL
VGRALPGETSPDELVRMMVGRNVDMSYPRRFATEPGEVVLETKGLSSSNGIRDIDLKVRA
GEIVGLCGLVGSGRTEVARAIFGADAVTAGEVRIFGKQRTGGPDAAAFAGVGLIPESRKA
EGLALIRTVSDNLAVAGLPKLFPNMMFSPGKARRSAQELIQRLRIATPSPNQSVAVLSGG
NQQKVVIGKWLAAGTRLFIFDEPTRGIDVGAKSEIFALIDQLVAEGAAVLMISSEQAEIV
HVCDRAYVMRGKRIVGELGRADLSEENIVRMGMHDE