Protein Info for PS417_07325 in Pseudomonas simiae WCS417

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 transmembrane" amino acids 153 to 171 (19 residues), see Phobius details PF02311: AraC_binding" amino acids 34 to 140 (107 residues), 34.3 bits, see alignment E=3.7e-12 PF07883: Cupin_2" amino acids 39 to 94 (56 residues), 28.9 bits, see alignment E=1.5e-10 PF12833: HTH_18" amino acids 205 to 284 (80 residues), 69.1 bits, see alignment E=6.7e-23 PF00165: HTH_AraC" amino acids 247 to 282 (36 residues), 34.7 bits, see alignment 3e-12

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU1509)

Predicted SEED Role

"Transcriptional regulator PobR, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBX7 at UniProt or InterPro

Protein Sequence (292 amino acids)

>PS417_07325 AraC family transcriptional regulator (Pseudomonas simiae WCS417)
MTKTAIPVFKLYGEHQQWPTPDLLHCETISRRSREYQWEIQPHRHADLCQLLYVHKGQAQ
LEIEGQRTTLNEATLQVLPPLCVHGFRFPEDVEGYVVTLSAPLVSHLQAQLGTTVDGLQT
LGSYPAGKDSDYLNSLFARLQDEYADEQPARDMMMHALVSVLLVWISRQAIQRRHPRAPR
GREYFRRFTQLVEQHYREHPKIEDLAHKLGISVSHLNGTCRELGGQPALQIMHDRQLLEA
KRLLTYTSMTINEMSEVLGFSDPTNFSRLFRRRVGFSPKAFREQLKAEAPHS