Protein Info for PS417_07285 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 46 to 69 (24 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 136 to 159 (24 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 211 to 234 (24 residues), see Phobius details amino acids 246 to 268 (23 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details amino acids 301 to 323 (23 residues), see Phobius details amino acids 335 to 354 (20 residues), see Phobius details amino acids 366 to 385 (20 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 347 (320 residues), 105.4 bits, see alignment E=3.1e-34

Best Hits

KEGG orthology group: K03449, MFS transporter, CP family, cyanate transporter (inferred from 95% identity to pfs:PFLU1501)

Predicted SEED Role

"Cyanate transport protein CynX" in subsystem Cyanate hydrolysis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U8M9 at UniProt or InterPro

Protein Sequence (395 amino acids)

>PS417_07285 MFS transporter (Pseudomonas simiae WCS417)
METVQTKPITAAWLMISVVLVALNLRPSMAAVGPLLSSIRGDVPLSFSSAALLTMLPVMA
MGLAMFFGMGLAKRFGEHRSIGVSLVVIGVATLSRLFLDSALELIVSAVAAGVGIAMIQA
LMPALIKSRFSDNVSLFMGLYVTAIMGGAALAASFAPFVQVQTGSWRIGLAIWAVLALLA
LVFWYAQRSALPPLPQTGVGPQASFFGNGRAWLLAVFFGLGTASYTCVLAWLAPYYVEQG
WSEQNAGLLLGFLTAMEVVSGLVTPAIANRRQDKRGVVAVLLVLIILGFCGLILSPQHLS
LLWPCLLGLGIGGLFPMSLILSLDHLDNPRRAGGLTAFVQGIGYLIAGVSPLIAGIIRDQ
LGSFEWAWWSLTAVIGLMLLIVTRFNPRHYARHIR