Protein Info for PS417_07205 in Pseudomonas simiae WCS417

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 12 to 43 (32 residues), see Phobius details amino acids 49 to 74 (26 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details amino acids 113 to 138 (26 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details amino acids 185 to 207 (23 residues), see Phobius details amino acids 244 to 267 (24 residues), see Phobius details amino acids 279 to 300 (22 residues), see Phobius details amino acids 310 to 330 (21 residues), see Phobius details amino acids 336 to 362 (27 residues), see Phobius details amino acids 374 to 395 (22 residues), see Phobius details amino acids 402 to 423 (22 residues), see Phobius details PF00083: Sugar_tr" amino acids 15 to 420 (406 residues), 94.2 bits, see alignment E=8.8e-31 PF07690: MFS_1" amino acids 17 to 284 (268 residues), 76 bits, see alignment E=2.7e-25 amino acids 259 to 425 (167 residues), 34.2 bits, see alignment E=1.4e-12

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfl:PFL_4138)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U3I0 at UniProt or InterPro

Protein Sequence (439 amino acids)

>PS417_07205 LysR family transcriptional regulator (Pseudomonas simiae WCS417)
MKPSASPQPRRAAAAAFIGTMIEWYDFYIYATAAALVFGQLFFPSDDKLFSTMAAFGTFA
VGFFARPLGGIVFGHIGDRIGRKKSLVITLVMMGVVTVCIGLLPTYAQIGAAAPVLLVLL
RVVQGIAVGGEWGGAVLMAGEHAPKGRRNFFASFAQLGSPAGLILSLLAFSAVTRLPEDE
LLSWGWRVPFLASALLLVVGLAIRLGVNESPEFLEDKALAEKARAIKKDQAPVIEVLRTA
WRPLLLCIGANTLGIAGVYFTNTFMIAYSTQQLGLPRSLILECLFFVAIIQFCVQPLAAW
VAEKVGATRFLCAMTVLAMASPYPMFVLVSSGQAPLIILGIALAVVCMASFYAVIAGFVS
GLFETRVRYTAISLAYQVCGALAGGLTPLIGTWLAHEYQGQWWPMAVFYSLIAAVSLVCV
LALSRRHASAHRLEMAHSV