Protein Info for PS417_07190 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 23 to 43 (21 residues), see Phobius details amino acids 61 to 83 (23 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 116 to 138 (23 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 180 to 203 (24 residues), see Phobius details amino acids 224 to 244 (21 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details amino acids 288 to 307 (20 residues), see Phobius details amino acids 313 to 337 (25 residues), see Phobius details amino acids 349 to 369 (21 residues), see Phobius details amino acids 375 to 395 (21 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 342 (313 residues), 116.5 bits, see alignment E=2e-37 PF00083: Sugar_tr" amino acids 31 to 197 (167 residues), 30.2 bits, see alignment E=3.3e-11

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU1483)

Predicted SEED Role

"Transcription regulatory protein opdE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UEH0 at UniProt or InterPro

Protein Sequence (408 amino acids)

>PS417_07190 MFS transporter (Pseudomonas simiae WCS417)
MPSASQAPRGLPEHNQQSVKQQWLAILSVAVGAFALVTSEFLPVGVLNDVAADLSISAGH
AGLMVTLPGIMAALAAPLLSVIIGAMDRRYLLIGLTLIMIIANMVVAFASDFSLLLFGRV
LLGISIGGFWATAIALSGRLAPKGVDVAKATSIIMMGVTLATVLGVPVGTWLSGLMGWRM
TFLVTALLGLPVLLAQVLLLPILKPEKPILVSDLPALFINPRARVGLIAVLLIGLAHFAA
YTYVAPFFKNSSGFDGPTIGSLLLMFGVAGVAGNIFAGFAANRSVRYTLLLVALMIGTST
ALFPYFATGLTGAAMLIALWGFAFGAFPACASIWMFVVAPKDVERGMPLFVALFQVIIAL
GSFFGGRIVDQMGSAVLLSLATALVGVGFVTVLVLGRNVSNSLAAQPA