Protein Info for GFF14 in Variovorax sp. SCN45

Annotation: N-acetyltransferase ElaA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 132 PF00583: Acetyltransf_1" amino acids 17 to 101 (85 residues), 39.8 bits, see alignment E=7.6e-14 PF13673: Acetyltransf_10" amino acids 20 to 118 (99 residues), 47.5 bits, see alignment E=2.7e-16 PF13508: Acetyltransf_7" amino acids 21 to 103 (83 residues), 33.7 bits, see alignment E=5.9e-12

Best Hits

KEGG orthology group: K02348, ElaA protein (inferred from 55% identity to mxa:MXAN_2329)

Predicted SEED Role

"ElaA protein" in subsystem cAMP signaling in bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (132 amino acids)

>GFF14 N-acetyltransferase ElaA (Variovorax sp. SCN45)
VFVAEQRCIYLDPDGKDMQAHHLYALDGGQLVAYLRLVPPGVSYREASIGRVLTGAAHRG
QGLGQELLTRGLAHAGALWPGAALRIGAQLYLRKFYASFGFVEVGEPYDEDGIPHIEMLL
PRTIPPSPPPCE