Protein Info for GFF14 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 TIGR01554: phage major capsid protein, HK97 family" amino acids 13 to 357 (345 residues), 331.3 bits, see alignment E=4.4e-103 PF05065: Phage_capsid" amino acids 73 to 357 (285 residues), 241.2 bits, see alignment E=7.6e-76

Best Hits

KEGG orthology group: None (inferred from 41% identity to npp:PP1Y_AT35562)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (359 amino acids)

>GFF14 hypothetical protein (Sphingobium sp. HT1-2)
MADKFLDEINTLATAVTSRFDDIEGKMKALEKAGNRPTIDGAENPELKSAFNAFLRGNQA
EFKAMSATGTDEGGVTIPKQMAASIRARVQEISPFRSVAEVVTVSTPDYRIPFATTGADA
VWVGEKDARPETSAPKIIELTPSFGEQYASPFVTPTLLEDSAYDIEGFLVNQVAIKFAQM
EGAAFLNGTGIGQPKGILTVATAATADKARAFGTLQHVTSGAASNLTSADPLRKLVYSLK
AEFRANAKWIANRDTIGTLMSFKDSTGRYLWQDGLEAGQPGRFMGYEVVEMEDMPNIAAG
ATPIMFGDFRRGYTIADRVGISMQYNPYAFAPYVAYQTRARVGGTPTDTDAVKILKIAA