Protein Info for PS417_07060 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 20 to 47 (28 residues), see Phobius details amino acids 61 to 78 (18 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 148 to 165 (18 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 206 to 226 (21 residues), see Phobius details amino acids 232 to 250 (19 residues), see Phobius details amino acids 262 to 284 (23 residues), see Phobius details amino acids 311 to 331 (21 residues), see Phobius details TIGR03082: membrane protein AbrB duplication" amino acids 9 to 164 (156 residues), 118.3 bits, see alignment E=1.4e-38 amino acids 182 to 337 (156 residues), 137.3 bits, see alignment E=1.9e-44 PF05145: AbrB" amino acids 32 to 338 (307 residues), 287.8 bits, see alignment E=4.6e-90

Best Hits

KEGG orthology group: K07120, (no description) (inferred from 99% identity to pfs:PFLU1446)

Predicted SEED Role

"Ammonia monooxygenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBS6 at UniProt or InterPro

Protein Sequence (342 amino acids)

>PS417_07060 membrane protein (Pseudomonas simiae WCS417)
MSEVTFKHWWGTPLVGLAGGYLASLVGWPLPYMVGSLLAIILVRCLTPWQLAEIPGGRKC
GQWVVGIGIGLHFTPVVIEQVMSHFGLIFFGALVTSMSSVVGVWLMRRSGEDRATAFFSS
MPGGSGEMVNLGARNGAVLSRVAAGQSLRVLVVVLCVPAIFKYLLEGGTPQFHPAPVSWP
WLLALFPMGALVAWGWQRLRQPNPWLFGPLLVSATASVIWDLHIGLPDGGSQIGQWLIGS
GLGCHFNRQFFRRAPSFMGRTLIGTALTMALATLAAVGLSALTHLDLRSLTLGMMPGGIA
EMSLTAETLQLSVPLVTAMQVMRLLFVLFLAEPLFRHWNRQP