Protein Info for PS417_07050 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 763 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF03212: Pertactin" amino acids 339 to 452 (114 residues), 85.5 bits, see alignment E=2.8e-28 TIGR01414: outer membrane autotransporter barrel domain" amino acids 355 to 763 (409 residues), 307.4 bits, see alignment E=9.2e-96 PF03797: Autotransporter" amino acids 500 to 741 (242 residues), 182.8 bits, see alignment E=1.1e-57

Best Hits

KEGG orthology group: None (inferred from 49% identity to pst:PSPTO_2225)

Predicted SEED Role

"autotransporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U3F2 at UniProt or InterPro

Protein Sequence (763 amino acids)

>PS417_07050 membrane protein (Pseudomonas simiae WCS417)
MKSINPHHFRYSRLFTTIKLMAVGPLYLLSEHALSAVTVDGNVGTGQLDVYPGSGALAYI
AQNNAALNIHDNAIVQEIQATNGSTLTIKSATVTSTHRFQAAVALSESNATITDASVTSY
TSGGLNVAHQPGTTIGSHAQVSRSEITGATYGANVTSHSLLELNDSKVTGSSQQGLRLLG
GAAIARNSEITGATTGVVMARESSTAIESPHLTLDGSRVEGLGGPAISVLSPIMAEIDVT
NGSSLSGKNGNMLELSGGGSANMRVNNSALDGNIQVGKDSALDLNLDVAFMNGDIVNSGG
SANVGLNNGSVLTGRLDNVDKLSVNSDATWVMVDGQQALNALSMNGGNVKFGESGAFYKL
DVANLSGTGGTFIMKADFGSLTGDFLNVTGTSAGHHQLLLAATGADPLNERLHMVHTADG
VANFSLVGGRVDRGTYSYDLTADNQNHDWYLDPDSKVISPSTNSVLALFNAAPSVLLGEM
TNLRTRMGELRFNGGQTAGLWTRAYGNKYEVSNDKTGLGYNQSQRGFTLGADAPLEAGDG
QWLIGAMAGHSQSDLDLNLGSKATINSYYVGGYATWLDSESGFYFDGVLKFNRLHNESNV
AMSDGKKSKGNYTQNAMGASAEFGRHITLDDGYFVEPYGQLAAVITQAQSYTLDNGLEAK
GDRSSSVIGELGVTAGNNIQLDSGGVLQPYLKAAVAHEFDQSNKVFVNDNSFNNDLSGSR
LKLGAGVAMSVSQNLSMHADLERSVGKNIKQPLGVNVGLRYAF