Protein Info for GFF1386 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: General secretion pathway protein K

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details PF03934: T2SSK" amino acids 233 to 278 (46 residues), 37.2 bits, see alignment 1.5e-13

Best Hits

KEGG orthology group: K02460, general secretion pathway protein K (inferred from 49% identity to ctt:CtCNB1_0630)

Predicted SEED Role

"General secretion pathway protein K"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (333 amino acids)

>GFF1386 General secretion pathway protein K (Hydrogenophaga sp. GW460-11-11-14-LB1)
LGRPGAAAIPASGRTQKGAALLLAMLVVTLVATLASAALWQQWRSAEVEQAERRRVQAGW
VLTGALDWARLILREDARDNQSSGNADHLGEPWAMPLEEARLSSFLAADKNNNTDGMLEA
FLSGEVIDMQSRMNFLNVVRTVGAGAQAKVELSEADMRSFAKLYEQLGLPTSELNTAANE
LRTTMSLALSDPLPSRTALVPRKFSQLAWLGISRNSLAVLEPHVTVLPTRTTLNLNTASA
QAICASVPGLDMAQARQITSARGREPFKSLADASAVVPAMTGQLSDLYHGVRSNHFEVRG
RLRLDDTIIEERSLVVRNNLDVRVSWRERFARR