Protein Info for GFF1376 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 52 to 71 (20 residues), see Phobius details amino acids 83 to 105 (23 residues), see Phobius details amino acids 111 to 131 (21 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 169 to 187 (19 residues), see Phobius details amino acids 209 to 228 (20 residues), see Phobius details amino acids 235 to 252 (18 residues), see Phobius details amino acids 272 to 302 (31 residues), see Phobius details amino acids 356 to 375 (20 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 213 (184 residues), 63.4 bits, see alignment E=9.4e-22 amino acids 221 to 371 (151 residues), 52.7 bits, see alignment E=1.6e-18

Best Hits

KEGG orthology group: None (inferred from 89% identity to vpe:Varpa_3147)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (388 amino acids)

>GFF1376 hypothetical protein (Variovorax sp. SCN45)
MSSTQPASAPTSTDLNSRHAAMALGLSLPADVVLYLLLPMYADQFGVTLAEAGMLLAANR
LVRIAGYGFVARFYARNGDRPTCTLAVVAAAVCALGYTTLSGFWALLPLRLMWGLCFAAL
NLSTQALATADPVGAARRNGRSRAFIAMGPVLALPLGALLAHWVGPRAIFGILAVFSLLA
CLVTRRLPSAPHPVGKPTRRFKRPNSLDSWSFMEGLTLDGLFIVGLSYLGKDLMPGGAVI
VAGVLMALRYLAEILLSPVGGHMAERWGAERLLVSLSLLTAIALVGFGLGWLWSCAALIV
VLRALQLPLLPPIVARRTPGPERVQALAARSVWRDIGAGTGPLIAGLLLPVASPPWIYGI
AALLLALAALACGWNSSPMAADATRTAG