Protein Info for GFF1362 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 37 to 55 (19 residues), see Phobius details amino acids 77 to 99 (23 residues), see Phobius details amino acids 109 to 134 (26 residues), see Phobius details amino acids 168 to 190 (23 residues), see Phobius details amino acids 210 to 231 (22 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details amino acids 296 to 318 (23 residues), see Phobius details amino acids 330 to 352 (23 residues), see Phobius details amino acids 358 to 382 (25 residues), see Phobius details amino acids 393 to 414 (22 residues), see Phobius details amino acids 426 to 446 (21 residues), see Phobius details PF07690: MFS_1" amino acids 46 to 406 (361 residues), 141.1 bits, see alignment E=2.2e-45

Best Hits

KEGG orthology group: None (inferred from 90% identity to sch:Sphch_0985)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (460 amino acids)

>GFF1362 hypothetical protein (Sphingobium sp. HT1-2)
MSEPALSLSASPSSSAPIDSPAPPPPAPATADYPSPFMGWLTVAILFLLYILSLTDRNIM
ALMVGPIKQDLGLSDLQISLLQGPAFAVLFCLCAIPLGMALDRFSRRIVLYLSVTVWSIA
AASCGLAGSFIGLAMARAGVGAGESGFGTGSYSVVGDSFPPHRVSLAMSVFIMGGVMGAG
IVFLLGGPIVGAAMKAGPATWPLFGTLQPWQQVFIMTGAPGILLAFLVFLFREPPRRKAV
SAGAGYGEAWAYIRRHKPLYTAAFVGFGLAYAATIGFQLWTPVYLARVHGWQPAQIGPVI
GIAQIAAAALIPLHGWTVDRLYRRGRKDAHLFWCLMTVLAAAPFGIAAFLVASPWATVAC
YWCFMALILSTASMGPATVQVVTPAYLRGRVSALYVLASGLIAMAGGPAFIGLVTDKLWG
DEMKVGLSLITSVFCVLLPAALLFALGRASMRRAHEGDPV