Protein Info for GFF1357 in Sphingobium sp. HT1-2

Annotation: Rod shape-determining protein RodA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 111 to 129 (19 residues), see Phobius details amino acids 136 to 154 (19 residues), see Phobius details amino acids 159 to 177 (19 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 300 to 325 (26 residues), see Phobius details amino acids 335 to 356 (22 residues), see Phobius details TIGR02210: rod shape-determining protein RodA" amino acids 13 to 359 (347 residues), 416.7 bits, see alignment E=4.1e-129 PF01098: FTSW_RODA_SPOVE" amino acids 18 to 361 (344 residues), 326.7 bits, see alignment E=8.8e-102

Best Hits

KEGG orthology group: K05837, rod shape determining protein RodA (inferred from 89% identity to sch:Sphch_0849)

Predicted SEED Role

"Rod shape-determining protein RodA" in subsystem Bacterial Cytoskeleton or Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (370 amino acids)

>GFF1357 Rod shape-determining protein RodA (Sphingobium sp. HT1-2)
MSIIPQSVTEFPWRVLGLLAAIALFGTLVLYSAAGGSITPWAINQGVRFVIFAVMALVLS
RIPLELFARFAFPAYGAVLVSLVLVELIGGVAGGSQRWINLGFMQLQPSEFMKPIIVLAV
ARFYAMLPVGEIRRWNAIWPALVLIGVPWALVLVQPDLGTATMILAGGITVMFLAGLPLR
LFIGSGLTVAAIIPIAFSFLHDYQKKRVLIFMDPESDPLGAGYHISQSKIAIGSGGIWGK
GFLQGTQSHLQYLPEGHTDFVFATMAEEWGMAGGVFLIGAFMLLFRWGIRVSLRTPDKFA
RLVAAGLTTTIFFYMAINLMMVMGLAPVVGIPLPFMSYGGSSMLTVMLCVGIIMSIDRST
KRTTRIGNWA