Protein Info for GFF1345 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 92 to 116 (25 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details PF04290: DctQ" amino acids 31 to 161 (131 residues), 79.3 bits, see alignment E=1.2e-26

Best Hits

KEGG orthology group: None (inferred from 84% identity to xau:Xaut_4765)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (207 amino acids)

>GFF1345 hypothetical protein (Xanthobacter sp. DMC5)
MTALLALSRGIDAVNTRIGKAAAWLILVSILVSALNAIIRKLFDMSSNSWLELQWVLFAA
VFLLCASWTLIDNEHIRIDIVNSRLPKRTRDGIDIFGHLFFLLPFSILLLWTSWPFFLAS
FEINEQSLNAGGLPQWPAKLLVPVGFFFLTLQGISELIKRIAIFTGKMEDPHEGAGGSHA
ALAAEAERLLADAELPDGASVAPAAKK