Protein Info for GFF1329 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 99 to 126 (28 residues), see Phobius details amino acids 139 to 157 (19 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 232 to 252 (21 residues), see Phobius details amino acids 277 to 300 (24 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details amino acids 360 to 382 (23 residues), see Phobius details amino acids 439 to 459 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 83% identity to xau:Xaut_4755)

Predicted SEED Role

"D-beta-hydroxybutyrate permease" in subsystem Polyhydroxybutyrate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (463 amino acids)

>GFF1329 hypothetical protein (Xanthobacter sp. DMC5)
MSFVVCLAALFFLMLVAYRGFSVILFAPVAAIGAVLLTDPAAVPVIFSGLFMEKMVGFIK
LYFPVFLLGAIFGKLIELAGFSRSIVSAVVNLLGPRRAIVSIVLVGAVLTYGGVSLFVVV
FALYPFGAEMFRQVGIPKRLLPAVIALGAFSFTADTLPGTPQLQNIIPTAFFGTTAYAAP
ILGIVGSIFIFVVGISYLEFRRMQAHRAGEGYGTGHLNESLPDDSVPPVPPLLAVMPLVV
VGLANLFFAWHIPGWFGPHASATLVEGGPAVSVETHVWAGIWAVEAALLLGILTVVAFGY
RAIAGHFAGGSKEAVGGALLAGLNTATEYGFGAVIAALPGFLVIKAALTSIPNPLINEAI
TVTTLAGITGSASGGLSIALGAMAQQFIAEAQAYGIPLEVMHRVASMAAGGMDTLPHNGA
VITLLTVTGLTHRQSYGDIFAVTIIKTTAAFVVIGFYYLTGLY