Protein Info for GFF1315 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1293 transmembrane" amino acids 102 to 127 (26 residues), see Phobius details amino acids 288 to 292 (5 residues), see Phobius details amino acids 314 to 337 (24 residues), see Phobius details amino acids 364 to 386 (23 residues), see Phobius details amino acids 408 to 430 (23 residues), see Phobius details amino acids 903 to 920 (18 residues), see Phobius details PF20155: TMP_3" amino acids 126 to 296 (171 residues), 44.4 bits, see alignment E=8e-16

Best Hits

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1293 amino acids)

>GFF1315 hypothetical protein (Sphingobium sp. HT1-2)
MSQPVASPHIDIIIDSKSAQAGAQRVNAALNSISAQASSLNSGLSGVNGTMIQTGSSAQQ
LAQRLQAANSNAAGLGGMLGRLQGVATGAAGSIGNLGASFAGLGGLAVAGGVAAIGAAIV
AVGTAVTSATAQVQAYKASLTTIIGDTEKAGLAFDALADFAQRTPFTLDEAVNGFVKLSA
LGLKPSEEAMTSYGNTAAAMGKSLEQMVEAVADASTSEFERLKEFGIKSKQEGDKVSFTF
QGVTTQVGNNAADIQKYLIGIGNTQFAGGMDRQAQTIGGAIAALGDQIFILFAKIGQGGF
ASGMTKILDGISSGIAAITPLLSGVGSVLGGIINFVAEVASGFGSMFTAMTGGGKESLGL
LDLLTVGFNVLGQWVTVAGNTVGAVFRGIANVIQWVGGGIREWMGKAFTWLTGASTATVS
DMGLSFIALLRSVKYVAGAIPDLFATAFQDVKKLFGNLGSIVGRLLSGDLAALGDIGSAF
TVSFANSAKQMGSIVDRAAAVAADQKGAQGALDRMLGRGKTAKIDDFAKETPGVTPTGAV
DKDAAKAAADAAKAEAERQKRIQEYWQTLDNSVTLSKMLPLEAEKHSKFLELQKLYGDKL
SDQDKAALAAAQGKIASKLREIALGKSITSMADQARQIENSNLIMSGKKLGLTEQEAGVQ
DALAKLRIDALNGGATLADLASDTWKTEEKRLETALRTQAALEGQAAAIAKAKDIAAGYS
PEYDRAQRIAGIEKDRADFLKSADAAGIGKGVQKSVLTGMGNAIDAVKAEAIYEFSDGIH
ALADEFGGAFGKAIGRLGKAMDRIAAATSGDLNNAGPFGSVAKMLGGDVADSFKDGAKGL
FKDFGDDIGKLFGANGDFSKTLGKTLGQMGAGAQVGSIAGNLASMAGIKTSATGSMVGGA
LGSFAGPIGSAVGGLLGGIVGGMFKKAKWATGQIDLVGGDIATGSVTGNKNAYRENAGVA
GGAVGSSIEQIAESLGAIITGDPNISIGQYKGAWRVSSTGRTGKLKGKYSDVTDFGDDGE
AAVAYAAQLAIQQGVLSGLSSFADRALRNSNDGNFESVLATATQFENLMKELAAFDDPLG
AAVDNVNSSLDKLISQMKGYGATADDLAQVERYRSIQLDKIIADQTSSLRDLQKTLSGEG
SGRTVLQRLNSSLDEYAGYQADLASGKSIDNDAFASLANEIFGLAGSAYGTSTGQFQSIL
SMLKSDNAAAISATEDRVMASQDAAAAAQQKLVEQNAAAAQQRDQLLAEQAKANALSAEQ
NALLRELVARGGLGNAFANALGYVNGVPTARTV