Protein Info for GFF1312 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 771 PF11339: DUF3141" amino acids 56 to 630 (575 residues), 840.9 bits, see alignment E=5.6e-257 PF05099: TerB" amino acids 698 to 746 (49 residues), 27.9 bits, see alignment 2.6e-10

Best Hits

KEGG orthology group: None (inferred from 76% identity to azc:AZC_0188)

Predicted SEED Role

"Poly(3-hydroxyalkanoate) synthetase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (771 amino acids)

>GFF1312 hypothetical protein (Xanthobacter sp. DMC5)
MAADTPAPSPFQNLLPFDPNAAMSAFQKGLSPAFNPPFGAGSATIQSGPLGAYLIDAAQR
HVLFLDLLRRRGNEQHDMTSHPMATVLTFDHEVLVSGRALARPINYSLSRIIPPPGVAVD
PRKRPVVVVDPRAGQGPGIGGFKTESEIGEALGTGHPVYFIGFASEPEPGQTFLDVVEGQ
VTFFERIRQMHPEAPPAFAIGNCQAGYQTLMVAMLRPELFGPCMVAGSPMSYWQGVHGKN
PMRYSGGLLGGSWLTNLVSDLGGGKFDGTWLILNFDNLNPANWLWGKQYDVWSKVDTEGP
RYLEFEKWWGDFIKLNGDEIQFLVDEFFIGDKLTRNEVRSTDGKVFDLRNISSPVIVFTS
QGDNISPPPQTLGWILDLYKDVDDIRAEGRTIVYCMNQKVGHLAIFVSAKVGAKEDEELV
RLMDLIDCLPPGLYELVIEPASEEQVKAGGPAWHSRFELRSLDDIRAYGRNSVEDDRAFA
AARRVSEINHSLYRTFLQPAVKAMATPQLADALFRFNPLRLSYTLFADQNPLMKGVEKLA
AEVTTARKPVDASNPFVTAQNFWSDQINAALDGWRDVRDRAVEQTFFAVYGSPVLQGMLG
LNIQEKVRELPANSPQKEAFRDRKIAEFRARVAEGGFNEALVRASLYVLSVTRAMDESAA
RSLNEARQKLTQLSLPEFKTLVRDQFYILLLERETAVEAIAHLVTDSAQRQELVNTVAGV
ATADGAYTPGERVLVERLADLLGVSAPKNVALAAVNTAPAPVSGQSLPAAV