Protein Info for GFF13 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 PF08497: Radical_SAM_N" amino acids 26 to 341 (316 residues), 466 bits, see alignment E=8.4e-144 TIGR03904: uncharacterized radical SAM protein YgiQ" amino acids 26 to 607 (582 residues), 870 bits, see alignment E=3.4e-266 PF04055: Radical_SAM" amino acids 343 to 547 (205 residues), 47.4 bits, see alignment E=3.8e-16 PF11842: DUF3362" amino acids 556 to 655 (100 residues), 145.5 bits, see alignment E=2.2e-46

Best Hits

Swiss-Prot: 89% identical to Y7973_BRADU: UPF0313 protein blr7973 (blr7973) from Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)

KEGG orthology group: None (inferred from 92% identity to xau:Xaut_0942)

Predicted SEED Role

"UPF0313 protein RPA0679"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (677 amino acids)

>GFF13 hypothetical protein (Xanthobacter sp. DMC5)
MDTQVCPSKPLTFLPWPAPASRPAPFLPMSRAEMAALGWDQCDIVLVTGDAYVDHPSFGM
AIIGRLLEAQGFRVGIISQPDWQSAEPFKALGKPRLFFGVTGGNLDSMVNRYTADRRLRH
DDAYTAGGEGGRRPDRSTIVYTQRCREAYKDVPIILGGIEASLRRIAHYDYWSDKVRRSI
LADAKADLLIYGNAERAVVEVANRIADGEAPRDIDDVRGVALFRRVPEHYTELHADDLDA
SDEGAARRPGDVVIRLPAYEQVEVDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWLN
PPPIPLTTQEMDAVYDLPYARAPHPSYGEAKIPAWDMIRFSVTIMRGCFGGCTFCSITEH
EGRIIQNRSEGSILREIELIRDKTPGFTGVISDIGGPTANMYRMACKDPKIEAACRRPSC
VFPDICPNLNTSHDDLIRLYRKVREVEGVKKVMVASGVRYDLAVKSPEYVKELVTHHVGG
YLKIAPEHTERGPLDKMMKPGIGTYDRFKEMFDAAVKQAGKKYYLIPYFIAAHPGTTDED
MMNLALWLKKNRYRADQVQTFLPSPMATATAMYHTGVNPLRAVRRGGSERVATVTGLRQR
RLHKAFLRYHDPDNWPLLREALKAMGRADLIGPRPDQLVPAHQPPGTGKAAGTRRPVRPA
PAGAQRFTTKGVPLRKK