Protein Info for GFF1294 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 48 to 69 (22 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 128 to 151 (24 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details amino acids 231 to 255 (25 residues), see Phobius details amino acids 267 to 292 (26 residues), see Phobius details amino acids 304 to 328 (25 residues), see Phobius details PF02653: BPD_transp_2" amino acids 47 to 316 (270 residues), 117.8 bits, see alignment E=2.5e-38

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 83% identity to sno:Snov_2396)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>GFF1294 hypothetical protein (Xanthobacter sp. DMC5)
MSTPTSAPATVAPAVSPNIWRPSGLISFLVIIVAMAGLPLVASTYTLTLMVPFFGFAIAL
LGFNLLFGYTGLLSFGHAMFLGIGAYAAAVMTSKLGVRSLELTLLVAVAAAVVIAVPVGF
LCVRYTRIFFGMLTLAFGMLFHSILFKFYGLTGGDQGMRVMRPLLFGMEFEGGKTAFITG
PFYYYALGLLTLLGYAMWRIVRSPFGLHLTAIRENAQKAAYLGVTVSRMRLAAYVLSGVY
GAIGGVILAVTIGLADPEIVYWTQSGNLVFMAVLGGSGAFAGPVVGGLAFVLLQDTVMSA
TQYWRFVMGAVLVLIVIFFPRGIAGLFGDAFARLKRGS