Protein Info for GFF128 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 46 to 64 (19 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 139 to 162 (24 residues), see Phobius details amino acids 174 to 196 (23 residues), see Phobius details amino acids 212 to 236 (25 residues), see Phobius details amino acids 269 to 287 (19 residues), see Phobius details amino acids 306 to 324 (19 residues), see Phobius details amino acids 340 to 365 (26 residues), see Phobius details amino acids 382 to 406 (25 residues), see Phobius details amino acids 416 to 439 (24 residues), see Phobius details amino acids 460 to 483 (24 residues), see Phobius details PF16980: CitMHS_2" amino acids 40 to 483 (444 residues), 657.6 bits, see alignment E=8.5e-202

Best Hits

KEGG orthology group: None (inferred from 81% identity to xau:Xaut_1445)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (484 amino acids)

>GFF128 hypothetical protein (Xanthobacter sp. DMC5)
MTAPGRGMRVASGIAATLLLTTLSAAPALAADGVPALNGAKLPLLWGIPFAGMLLSIALF
PLLASHFWHHHYGKVALFWGLAFAVPFSLTYGPSATAHEVVHTAILEYIPFIILLFALFT
VSGGILVTGNIKGTPLVNTVILAIGTVIASLIGTTGASMVLIRPLLRANDGRRYNVHTVV
FFIFLVSNIGGSLTPLGDPPLFLGFLKGVNFFWTTTHLLHDTAVVATFLLVAYYLLDRYF
YSREDATARKAPDPTPTTERLGLRGAQNVPLLGGIIGAILISALWKPGINFDVYGTHVEL
QWVARDVLLLVFALISLAITPALVRERNGFDWEPIKEVAKLFAAIFLTIIPVIAILKAGT
SGALAPLVNLVTAPDGQPVNVWYFWLTGALSAFLDNAPTYLVFFNLAGGDPHQLMGPLAV
TLEAISAGAVFMGAITYIGNAPNFMVLSIARHRGVKMPSFFGYMAWSLTFLLPPFALITW
LYFV