Protein Info for PS417_06440 in Pseudomonas simiae WCS417

Annotation: iron ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 PF00005: ABC_tran" amino acids 27 to 170 (144 residues), 97.5 bits, see alignment E=1e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBG5 at UniProt or InterPro

Protein Sequence (261 amino acids)

>PS417_06440 iron ABC transporter (Pseudomonas simiae WCS417)
MSQGLSVHNAQVSYGRRQIVHDLSLPTLPHGSLTALIGPNGAGKSTLLRAVAGLEKMQGV
VRLGDLDLSAMSVAERARRVTYMPQNLPPGLSLSVMESVIAALRVANVEGIPLPSDACLR
EAFDALQRIGIAHLADQLLSTLSGGQRQLVSLAQLIARRPQVMLLDEPTSALDLNYQLKV
MDCVRDLVREHNLIAVVVLHDINLAARFADHIAVLRQGRLYASGAADDVLNPLLFAEVYR
VRARIERCSQQTVQVLVDGAF