Protein Info for GFF126 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 832 transmembrane" amino acids 32 to 57 (26 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details amino acids 251 to 271 (21 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 302 to 322 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 75% identity to xau:Xaut_3114)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (832 amino acids)

>GFF126 hypothetical protein (Xanthobacter sp. DMC5)
MRIERVRAGSRPADVPLRQKPRGALSRFWGRILDLTLVLWVVRVPLLSVLLGLAMMAGVT
QAQDVTLDVAMAGAPVGATAGVSRAILSLVGAVFLLWAMPVHYAARLLVETDNGLAAKVA
RRDSAAGRRGIAGHDWLMAAMVREVPRLIGVLPFLIFAIGANAAISNLPTLADRPAVDAA
HHQLVLLVWAMLAAVPLFYLYCVLRGRLTQVQAFAALDRALGRWLKPVFGLLGIAPRRDD
AEGQLHASGRLALLVYALLVVAVLVASPHWLAARLPLAYAVPLIFGGWVPILAYLSSVGR
RFHVPILTGLFIAGAVGVYVFGDNHAVRTVTADEPAYRRTSIVQAVHLWMQANGCAGQPS
SCPRPIIVAAAGGASRAGFFTASVIGHFLDYDQQKPAFSFTRADGSKVSRVARDDGRFTP
AIQSALDGKDIATRLFAISGVSGGSYGAAVVAAALSARTGKAPPCPTEAPAHWFGGASHG
WRDCLESMTADDFLTATFFGLAFHDQVQLFLRDRAALLEEAWEASFARHAGAAGAPAGPG
AARRLSEPFLSAPRDPEHWVPYLVLNGTSVETGQRIITTDLLPTYAAASRCPSGGPNAEC
PIFTHAIDFHSLVRSDLDVRLSTAATNSARFPVISPPGSIYQVDTDVVDRIVDGGYFENF
GAESALELAQAMVDVEPALAPFVLVISNDPQSVLTEERTARGVVVPDAAEHSFLPEVAGP
FGAIGAVRGGRGRLAVAHAAAWLDARFGGRCPVNLVQIKVWPEDSASRCPVGTATPEKIR
QVSMSWWLSKPVQMNLHEQLEPTADRCNNRTAVEQVWTALATRSEACTGPTP