Protein Info for GFF1243 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: COG3267: Type II secretory pathway, component ExeA (predicted ATPase)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 PF13191: AAA_16" amino acids 31 to 160 (130 residues), 35.5 bits, see alignment E=1.4e-12 PF13401: AAA_22" amino acids 39 to 170 (132 residues), 61.2 bits, see alignment E=1.3e-20

Best Hits

KEGG orthology group: None (inferred from 99% identity to sec:SCV51)

Predicted SEED Role

"COG3267: Type II secretory pathway, component ExeA (predicted ATPase)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (322 amino acids)

>GFF1243 COG3267: Type II secretory pathway, component ExeA (predicted ATPase) (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MRVEVMEHYGLTQSIEQAGYYETAHHKQLMKDIKGAIREGRLIAVCGVVGSGKTVTLRRL
QQQLLDENKIIVARSLSVDKQSVRLATLINALFYDLAQDKQVQIHKQGERRERELQELVK
KGKRPVALFVDEAHDLNGNTLTGLKRLMEVVEDGGGRLSVVLAGHPKLRNDLRRPTMEEI
GYRTDIFTLDGITGSQREYIQWLLKTSTGKGKPEDILTTEAVDLLAMKLRTPLQVQLHLT
LAMEAGYQTGEKPITATLVESVLSRQLDDLEPTLTRHGYRLKDMVEQFDAKPAEIRALFN
NQLDPARTAELRDRMLAVGLPI