Protein Info for GFF1235 in Variovorax sp. SCN45

Annotation: Methionine sulfoxide reductase-associated methionine-rich protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 88 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR02953: pentapeptide MXKDX repeat protein" amino acids 3 to 76 (74 residues), 75.6 bits, see alignment E=1.2e-25 amino acids 39 to 88 (50 residues), 55.5 bits, see alignment E=2.1e-19

Best Hits

Swiss-Prot: 58% identical to MRPX_AZOOP: Methionine-rich peptide X (mrpX) from Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS)

KEGG orthology group: None (inferred from 88% identity to vpe:Varpa_2656)

Predicted SEED Role

"FIG01005593: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (88 amino acids)

>GFF1235 Methionine sulfoxide reductase-associated methionine-rich protein (Variovorax sp. SCN45)
MNKLTATLLATCIAFAGASAFAADEMSKDGMAKDSMSKDGMKKDSMAKDSMSKDAMKKDS
MSKDSMSKDAMKKDSMSKDSMSKDSMSK