Protein Info for GFF1218 in Variovorax sp. SCN45

Annotation: O-antigen acetylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 transmembrane" amino acids 18 to 39 (22 residues), see Phobius details amino acids 50 to 75 (26 residues), see Phobius details amino acids 94 to 118 (25 residues), see Phobius details amino acids 134 to 152 (19 residues), see Phobius details amino acids 157 to 157 (1 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details amino acids 214 to 237 (24 residues), see Phobius details amino acids 249 to 265 (17 residues), see Phobius details amino acids 271 to 289 (19 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details amino acids 342 to 364 (23 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 15 to 360 (346 residues), 93.9 bits, see alignment E=5.3e-31

Best Hits

KEGG orthology group: None (inferred from 52% identity to bcm:Bcenmc03_4138)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>GFF1218 O-antigen acetylase (Variovorax sp. SCN45)
MSLLAGPAAPPRNFRIDVLRGIAISLVLLLHFHLSYSLLDSPLAAVLPAVFIKSVAVNGN
YGVTMFFVVSGYLITSTTLKRYGSLGNVDVRGFYAFRFARIVPCLVVALALIVGFGMLGQ
PAFMNVAKPGWPQVGYPVAVLSVLTFWHNLLMQHAWYFNYAMNIYWSLSVEEVFYLAFPL
LCFGLKRQWAIVAVWLLAIVVGPVYRGFHADDEIYFMYGYLACFDAVAFGCCAALVAQRF
SFDGWAGRQLQLAAACLVAVTYLRGIHGNEVFGFTAIAAGTAVLLVGARNEKVPAWALRS
RALAGLRWLGRHSYELYLFHIIVLGLMRGVVARGAMPSVWKLPAMVFFIAASVAVAWGIA
RFYSEPMNAWLRRRLLERQKLVEG