Protein Info for GFF1217 in Sphingobium sp. HT1-2

Annotation: Cellulose synthase operon protein C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1124 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF14559: TPR_19" amino acids 135 to 199 (65 residues), 27.4 bits, see alignment 1.4e-09 amino acids 513 to 568 (56 residues), 30.8 bits, see alignment 1.2e-10 amino acids 549 to 611 (63 residues), 27.3 bits, see alignment 1.5e-09 PF13432: TPR_16" amino acids 135 to 186 (52 residues), 30.1 bits, see alignment 2.2e-10 amino acids 209 to 264 (56 residues), 31 bits, see alignment 1.2e-10 PF13176: TPR_7" amino acids 240 to 264 (25 residues), 22.1 bits, see alignment (E = 4.5e-08) amino acids 538 to 568 (31 residues), 15.1 bits, see alignment (E = 8.1e-06) PF05420: BCSC_C" amino acids 776 to 1120 (345 residues), 331.7 bits, see alignment E=2.1e-102

Best Hits

Predicted SEED Role

"Cellulose synthase operon protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1124 amino acids)

>GFF1217 Cellulose synthase operon protein C (Sphingobium sp. HT1-2)
MSRTLRLRITCAALALACMAPMPTLADVPGVAPLIQQGRYWQSKGRQDLANQAYRRALAL
DPNNAEARKGLAGPSPKAQPAPKPTPAPTPARRAEATPRPTPTPAAAPSAANRTQTARPS
GNVGGGASRASGFKALDANDLDGAERAFERAVAANRNDADALGGLGLVRLRQGRFGEARD
LLDQASQRGSAGQWAQALASARFFGGLADARAALAQGRLGEAQADAEALVRSGYPQRGPA
LELLADIYERQGRYADAADLYRQANEGTKQSDGRLASRAARDRARAAAARGDDVTAEQEF
HSGLLLDQQDPWIRYEFARYLIQRQRLPEAESLINSLGSSSDPDWLYAAALLNADRGRAS
AADTLMARIPEMQRTEQMRSFAVGLKVDGAIERAKAMAAQGRQADALMALRQLAATPGID
PTKQAAVADAMFELGDREGAAQLAQQALTAGTITDPAGYEPIVRVLAKTGRDAFATSAVQ
RAAQLAGNTPDGQRVVARMNGIMAASQADRLRLAGQNAQAFDLLQGAWNAAPGNQEVLAA
LARLYQSGGMPAQAAQTYQLVLAQSPNDKGALLGLIETAGAAGDKDLARATIERALQQSP
NDYQIYMAAARMEQARGDEGAALRYLKRAKEVYAAQSGAGNVTASNPFAATMQGNNPFRN
QSAAAAPAAVNPFALGSGARLAGQAPSPAGMAFAPMSQAGEAGGFPPAVVAQSAPMPGGY
PAVGVPASAPGGSMMTSGDPVMDRIQTEIRTLTRDSGPRAELRTGYRERSGEAGLSELKE
LTGSAEVSTSLGNGRIKARAEAVVLDAGRPSRSGLARFGRNATPEGQGIVDQEESALVDA
DTQHASGVALSASYETPLLKLEAGVTPLGFEDSDVTWHAAISPRFSPYATARAWFERKPV
TDSVLSYAGTRDPVTGAMWGQVMRTGGGASFSYDQDGAGVYGDLSYYKYAGHDVRKNHGF
QANVGGYLPFYRGDRSSITGGVNVNYQDFDNNQNYFTYGFGGYFSPQSFFSISLPVRYAY
ASDLLEVKAGVAPGYQSYSQDQVNVYPTDPAAQAVLDGLKAQNSDVRSYYDSLSKTGFAL
SADGSIYYRVSPSTRVGGEMSINTFGSYDEFKSLIGIKQSLGGN