Protein Info for GFF1212 in Variovorax sp. SCN45

Annotation: Oligopeptide transport permease protein OppC-like @ Glutathione ABC transporter, permease protein GsiD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 44 to 65 (22 residues), see Phobius details amino acids 108 to 133 (26 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 170 to 187 (18 residues), see Phobius details amino acids 226 to 249 (24 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details PF12911: OppC_N" amino acids 29 to 81 (53 residues), 52.4 bits, see alignment 3.7e-18 PF00528: BPD_transp_1" amino acids 123 to 306 (184 residues), 114 bits, see alignment E=7e-37

Best Hits

Swiss-Prot: 74% identical to GSID_SHISS: Glutathione transport system permease protein GsiD (gsiD) from Shigella sonnei (strain Ss046)

KEGG orthology group: K13891, glutathione transport system permease protein (inferred from 96% identity to vpe:Varpa_2621)

MetaCyc: 74% identical to glutathione ABC transporter membrane subunit GsiD (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>GFF1212 Oligopeptide transport permease protein OppC-like @ Glutathione ABC transporter, permease protein GsiD (Variovorax sp. SCN45)
MTQASGVPAESIVPLSPVAVVQAAGKVRTPWGECWRRFKKQPVGIVAAAFVLLLVFVAVF
APWIVPFDAENFFDYDMLNSGPSATHWFGVDPLGRDIFSRILMGARISLMAGFLSVLVGG
FVGTAFGLLAGYYEGWWDRIVMRVSDVLFAFPGILLALGVVAILGSSMTNVVVAVSVFSV
PAFARLVRGNTLVLKQQTYIEAERSIGASDWTIIVRHILPGTISSIVVYFSMRVGTSIIT
AASLSFLGMGAQPPTPEWGAMLSEARADMVTSPHVALFPSLAIFFTVLAFNLLGDALRDA
LDPKIDRQ