Protein Info for GFF1202 in Xanthobacter sp. DMC5

Annotation: Putative protein-methionine-sulfoxide reductase subunit YedZ1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 63 to 84 (22 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details amino acids 166 to 189 (24 residues), see Phobius details PF01292: Ni_hydr_CYTB" amino acids 10 to 199 (190 residues), 87.7 bits, see alignment E=4.1e-29

Best Hits

Swiss-Prot: 47% identical to YEDZ1_AZOOP: Putative protein-methionine-sulfoxide reductase subunit YedZ1 (yedZ1) from Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS)

KEGG orthology group: None (inferred from 83% identity to xau:Xaut_0962)

Predicted SEED Role

"Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (221 amino acids)

>GFF1202 Putative protein-methionine-sulfoxide reductase subunit YedZ1 (Xanthobacter sp. DMC5)
MKEHTSRRMHPLALRIMHWTNAIAMIVMIGSGWKIYNDEVIFGFLHFPQPIVLGVWAQHA
LQWHFFGMWVLVLNGLAYLAYGVATGRFARLFFPIRPREVIAEAVAALTFRLKHQDLTHY
NAVQKLLYVGVITIIVVQVASGLAIWKPVQFSGLVSMLGGFQSARLIHFLGMAAIVLFMV
VHVALALLVPKTLLAMFTGGPRLPAPAPLHADGAPAPDPSR