Protein Info for PS417_00605 in Pseudomonas simiae WCS417

Annotation: peptide transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1125 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00501: AMP-binding" amino acids 174 to 510 (337 residues), 234.1 bits, see alignment E=4.9e-73 TIGR01733: amino acid adenylation domain" amino acids 193 to 585 (393 residues), 344.6 bits, see alignment E=7.3e-107 PF00550: PP-binding" amino acids 668 to 733 (66 residues), 51.9 bits, see alignment 1.5e-17 TIGR01746: thioester reductase domain" amino acids 769 to 1125 (357 residues), 323.7 bits, see alignment E=1.8e-100 PF01370: Epimerase" amino acids 770 to 949 (180 residues), 29.8 bits, see alignment E=7.9e-11 PF07993: NAD_binding_4" amino acids 772 to 1008 (237 residues), 177.1 bits, see alignment E=7.8e-56

Best Hits

KEGG orthology group: None (inferred from 68% identity to pfs:PFLU0119)

Predicted SEED Role

"Non-ribosomal peptide synthetase modules and related proteins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U0K5 at UniProt or InterPro

Protein Sequence (1125 amino acids)

>PS417_00605 peptide transporter (Pseudomonas simiae WCS417)
MRRLSIGFSGASSALEAVRQELEQYGHITGNEGVDLCIDDGDQSVQGNARPIPKLSLRLG
VGPITDYGLPALQLRAYRPDRKLLAVLDIADELSGNGQRLRRRVIRELVEWTALHISGFS
RDPGYFELKAVANGWPEHCLDALEALAFTHRFNRSADPDVIEAARVPLINRLQASFHTFA
DRPALHIGASEVTYRQLHAQALAIQQRLHPLLVTGQTPAVVGICLEKTIGLYASILAVLG
SGAVYLPLNPDQPPHCHRAMLESAGAQVLLDAGQHPLRACFSSLDVSGHALHDVDLTQPL
ARLHRHADAPCLMLFTSGTTGQPKGVLLSQANLAHFTAWFRSCVNLDEQSRVLQFSPLSF
DSSLIDIFPALVAGAQLIVPSTEQRQDPQQLLDLLHRQRITHAFLPPALLSILPLDQPLG
LTHLLTGGDVCEPHVIERLSAQCQFHNLYGPTEATVLVTHRMLRPNDSNRNVGRPIANSQ
VLILDEHLQPVDEGVMGEVYIVGPGVSLGYVNALSQASSSFVELAVPSELPLRAYRTGDL
AQWTADGIVLGGRRDDQVKIRGFRVEPLEIEQCLRSSRLYRQVAVVIDRDRRIRGFVAQP
EPGASMTALQHHARQWLPDYMQPGVWDELPRIPCSSNGKIDRAALLAVPIQPTLPTACSA
AQTPLQTQLTHLWIELLALPTGELSIDESFFDLGGHSILLSTLLLRFREQFGRSFSLNHF
IEAPTIRTLATLVEQGERPDTSASQAVRDAHRERIYNTLPENCVGDPHKVIVTGANSFVG
VHIVEALLAKGATAVACLVREKPGQSAMARFTQALREYRLEHLDLSRVQVFAADVSLPRL
GLTSNAYETLAKEFGVLVHNAARVNHVLDYASLTRDNVDPVLECLRLCETHCKKVLNFVS
TLSASSSVDTQGYVLEAPAAATLPLYIKNGYNLSKWVAERQLARAVERGAWVNIHRPGNI
SFNSLTGVCQPQKNRLMLMLKGSLQMGLLPKLALNFDLMPVDFLARFIAFHCTRFQAGSS
VFNLHNPQPLSWAHYLDGFSQAGHRFKRVSVEQWQQSLHTISHDNALFGVLGFYLGRLDE
DIGDTSMIRYDNARQAVQQMGAQYPEKDPALLSKGCDYLKATGFL