Protein Info for GFF1195 in Variovorax sp. SCN45

Annotation: iron-sulphur protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00355: Rieske
  • amino acids 56 to 135 (80 residues), 61.9 bits, E=4.3e-21

Best Hits

KEGG orthology group: K03384, [EC: 1.14.12.-] (inferred from 68% identity to bja:blr4922)

Predicted SEED Role

"Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17)" in subsystem Alkanesulfonate assimilation or Taurine Utilization (EC 1.14.11.17)

MetaCyc Pathways

• taurine degradation IV (1/1 steps found)
• superpathway of taurine degradation (3/6 steps found)

KEGG Metabolic Maps

• 1- and 2-Methylnaphthalene degradation
• 2,4-Dichlorobenzoate degradation
• Fluorene degradation
• Fluorobenzoate degradation
• Taurine and hypotaurine metabolism
• Toluene and xylene degradation
• gamma-Hexachlorocyclohexane degradation

Isozymes

Compare fitness of predicted isozymes for: 1.14.11.17

Use Curated BLAST to search for 1.14.11.17 or 1.14.12.-

Protein Sequence (411 amino acids)

>GFF1195 iron-sulphur protein (Variovorax sp. SCN45)
MSTVAPTVPPTSAAGEWQPIAFDTGTAYGRKPPSHKPELTEVGAGTPMGELLRRYWHPVG
LTADAGDTPRQVRVLGEDLILFRDKKGRPGLVHWRCAHRGASLYYGRVEEEGIRCCYHGW
MFDVQGHCVDQPCEPDGGARTRGRVRQPWYPVEERYGLIWAYLGPAEKKPVLPRYDCLET
LDEGETLEADGNSIGGGGPQIIPCNWLQHYENVADPFHVPVLHGSFSGTQFVALMGQMPE
VTFESTETGVMITSIRKTEDGSTFRRVAGPVLPTLRVVPNPRVAAYGRVESIGWVLPIDD
HSFRIYTAGRVKTPGDLARVRSRLNGKLWEELTEAEHRAFPGDYEAQVSQGAITAHSEEH
LASSDRGIVMLRRLLQRQLDAVREGRDPAGVSFDPEAPPVHFEAGNFLVRE