Protein Info for GFF1150 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Hydroxymethylpyrimidine ABC transporter, substrate-binding component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF09084: NMT1" amino acids 41 to 264 (224 residues), 139.4 bits, see alignment E=8.4e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (344 amino acids)

>GFF1150 Hydroxymethylpyrimidine ABC transporter, substrate-binding component (Hydrogenophaga sp. GW460-11-11-14-LB1)
MRAPFIRLAATLAVGITTWSGAAAQAPTEDIRIALSWLRNGQYAALMVADAKGYFAEEGI
KVSFIDGGPGKNPIPTVGVGQAQFGVMAHSFIMSARLAPSPVDVVAIGALIQELPYVYIG
LGNPGDPEPTPKDLEGKRVGIQADGEMFLKALAKRNNLDLSKIKVETVLANAEPLLVGKV
DYFTGHLHNQTYQVELEAAKADAPAHLKGKTWKVVRFSKYGVASYGDTLFTSGKMIKEKP
ETVRKVVRAVAKGLKFTIDHPAEAVKLVDAYPQQIERADKLAWRMKVQNPLNQSADTKAR
GLLWMDPKVWDDTMAFYKEYDQIKSVAPAAEMMTNAFNPGIKAN