Protein Info for GFF1143 in Xanthobacter sp. DMC5

Annotation: Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF13641: Glyco_tranf_2_3
  • amino acids 40 to 208 (169 residues), 35.2 bits, E=2e-12
• PF00535: Glycos_transf_2
  • amino acids 43 to 206 (164 residues), 96.1 bits, E=3.5e-31
• PF04138: GtrA_DPMS_TM
  • amino acids 277 to 392 (116 residues), 58.2 bits, E=1.4e-19

Best Hits

KEGG orthology group: K00721, dolichol-phosphate mannosyltransferase [EC: 2.4.1.83] (inferred from 69% identity to xau:Xaut_1363)

Predicted SEED Role

"Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) homolog" (EC 2.4.1.83)

MetaCyc Pathways

• protein O-mannosylation II (mammals, core M1 and core M2) (1/5 steps found)
• protein O-mannosylation III (mammals, core M3) (1/5 steps found)
• protein O-mannosylation I (yeast) (1/8 steps found)
• protein N-glycosylation (Haloferax volcanii) (1/11 steps found)
• protein N-glycosylation initial phase (eukaryotic) (1/19 steps found)

KEGG Metabolic Maps

• N-Glycan biosynthesis

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.83

Protein Sequence (396 amino acids)

>GFF1143 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase (Xanthobacter sp. DMC5)
MPDSAPAPFGSPYSRGPGIVRQSSAEPESDAAAGVLPAVPRLSVIVPTFNERGNVERMLV
GIDGALAGVPYEVIFVDDDSPDGTADTVRQIGERDPRVRCIRRIGRRGLAGACIEGMLAA
QAPLVAVIDGDLQHDVNVLRTMLYRSPDADLVVASRYVDGGSADGLNRRRGAMSRTATGM
ARRILGIKTSDPMSGCFLIRRALVERLAPSLSPNGFKILLDIMTATKEPMRIVEVPMAFA
ARDEGDSKLDSRTMLDFLTLLIFKVSGGAISPRFVWFSAVGGAGLVLHLLMLKGGLLVGL
GFAVAQSIATIGAMTSNFAMNNVFTYRDRRVSGLAMLPALLKFYLICGAGAVANVGVASW
VFEGGWRWWLAGVAGSVIGAVWNFAMTSLFVWGPSK