Protein Info for GFF1137 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1156 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details TIGR01414: outer membrane autotransporter barrel domain" amino acids 659 to 1156 (498 residues), 128.7 bits, see alignment E=1.5e-41 PF03797: Autotransporter" amino acids 891 to 1136 (246 residues), 182.5 bits, see alignment E=6.5e-58

Best Hits

KEGG orthology group: None (inferred from 73% identity to xau:Xaut_3532)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1156 amino acids)

>GFF1137 hypothetical protein (Xanthobacter sp. DMC5)
MMIRLPLLQSSASRFVLALVCSGSAMPALAGSFTVPPATGQQTVSGSDTGTIDAGATLNT
GSSASIVWNGNATTSPGVVITNSGTITSTNRTIDTTGAFTGSFTLNNKAGGNVSSKDDAF
RINGPLANGTVIVNNDGTISSQTGQALDFDKATSATATITIGNTGTISSAGSDAIRLGGG
TIGITNSGTIETTSSGKRAIKFDTASNFDTLKSLTITNEAGGVITGTDDAIKLSSKTTST
AAPVISITNAGTIQSKAGGQGIDLGDIYSTNATITITNQKTGLITAADNDGIQGTNGVTI
NNYGTISSYYAAGTADTQNNSAVKVSGDDQGQAITLKVNNYAGALISGAYHGIKATGSDD
NLIVTNNGTIEGRNGSGVNSNGTGTLTNYGTISGTFDPAASFGDGDGVDFDHAGTVLNYG
TIEGLGSKGIKPGETTPSTSEGIAIGGGSITNGDAAHTSALISGANNGILVDDSNSGDAY
AAMSITNYGTIQGLDGYGIRYVNSGVDPTKSLTVTNYGTISGTTYAVQMGNGSDLFVYGT
GSKVVGIVDAQGGVDTLQLGANGENVTFDLSLLGNSATYRNFEVLTAGTASLTTLTGTSD
FSGSAVFDQSSVYLKGASLAGASLNVSGTNALPAELIGWGTVGGLATSGNTTILLGTASS
RFGTLDVKGSAAISGTYRVDVDAAGNTDLIRATGTTVIGAGAEVEMVGQLAWGRDYTILS
SAGGVNGTFSLDVLTPIDYLFVNPALSYDANTVYLSLARNGVAFSSFAVTPNQRSVASAL
ERIGAGPKADTSKLYSAFVTQTAADKPTLALSQLSGDLYATLPGQMATENMMVNDLILGR
LRQAGYTGAKGAEAALGAGGPARAYADPATPGAQAFKAIKAPEPGPVWTTWAQGYGQWLS
TSANGNAAAADTNLGGLLIGADLSASNWVLGLAAGYSSASTSADAASANTETWRIAAYGG
ATFDAIKLRAGASYGWSGIDQSRFVALTGESPKTSYNGTAGNLFAEAGYTFAFSGVALEP
FAGIGWTSVNLGSFIENNAPIAGLASTGSSFDTAYSTLGLRIATSFNASGIVVTPHASAG
WRHAFGDVTPQTVLSFINTGTAFGIDGLAIAEDSIVGSVGVDFAFSTGATFSLAYEGMAG
DGTSYNAGKATLAVKF