Protein Info for PS417_05775 in Pseudomonas simiae WCS417

Annotation: tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

Predicted SEED Role

"Phage tail length tape-measure protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U2V0 at UniProt or InterPro

Protein Sequence (486 amino acids)

>PS417_05775 tail tape measure protein (Pseudomonas simiae WCS417)
MQETKYGVRLVQEDLRWMIGDADLGSVLTPFTAGLAAPVSLEAAPQPQPPLTSALMTVST
GLNALTQEQVRLRETLETLNSTLSAREQTLATKTADVTAAPGASEPKKPEPATRSWREQG
LEMGTDAVKFVGKEVVSGLWDKAKDRLSGKALDAVADRYPTAAKWLKEDKDGNKGKECCC
TGALPPDIRGSLEPVQSQVPEGVGKTARAQEKARPKDTRKKPRGPRSKTRQSSSREVKTS
VVRRAMDLKSPRAVSAAKVSPPLNVVVQRQLPFEGTRASQAATGLPGRSFASSAALPTSR
PLMRGAGKGLAAGLSGTLAKLESSAVRRLGPLRYVDTAMDVAQGVRNGDVKAIGAGLSTA
GGAWAGASAGAAIGTLVFPGVGTAVGGAIGGLLGSEAGAWLGDKLFGPRDRLPAPADVGK
HLSNAQADNRQLTFSPHITINAPEQASYQQLAALVVQQIEAQFTPLPMDSLLATRRDSAL
TDTGVA