Protein Info for GFF1128 in Xanthobacter sp. DMC5

Annotation: Putative competence-damage inducible protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 PF00994: MoCF_biosynth" amino acids 13 to 172 (160 residues), 104.5 bits, see alignment E=4.2e-34 PF24102: FLAD1_M" amino acids 175 to 246 (72 residues), 57.7 bits, see alignment E=8.2e-20

Best Hits

KEGG orthology group: None (inferred from 86% identity to xau:Xaut_3541)

Predicted SEED Role

"Molybdopterin binding motif, CinA N-terminal domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (250 amino acids)

>GFF1128 Putative competence-damage inducible protein (Xanthobacter sp. DMC5)
MVEAGDARSVTAALIVIGDEVLSGRTKDKNIGHIAERLTDVGIDLREVRVVADVEEDIVA
AVNALRARFDYVFTTGGIGPTHDDITADAIAKAFGVSIDVDPRARAMLLEYIAEKDLNEA
RLRMARIPAGATLVVNEVSKAPGFRIGNVIVMAGVPRIMQSMLEAVLPELRKGRPMLSRT
ILAEAKEGDIAAPLRKIAETYPDAIIGSYPFRDEVDGRYKTNLVVRAREPETLAAAGDAV
ARMVEDNAGG