Protein Info for GFF1114 in Sphingobium sp. HT1-2

Annotation: Lipopolysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 transmembrane" amino acids 15 to 38 (24 residues), see Phobius details amino acids 44 to 70 (27 residues), see Phobius details amino acids 83 to 105 (23 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 153 to 174 (22 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 226 to 250 (25 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 287 to 309 (23 residues), see Phobius details amino acids 328 to 348 (21 residues), see Phobius details amino acids 360 to 387 (28 residues), see Phobius details amino acids 393 to 411 (19 residues), see Phobius details amino acids 421 to 439 (19 residues), see Phobius details amino acids 446 to 467 (22 residues), see Phobius details PF01943: Polysacc_synt" amino acids 13 to 277 (265 residues), 101.7 bits, see alignment E=5.2e-33 PF13440: Polysacc_synt_3" amino acids 34 to 326 (293 residues), 188.8 bits, see alignment E=1.3e-59

Best Hits

KEGG orthology group: None (inferred from 64% identity to sjp:SJA_C2-02170)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (489 amino acids)

>GFF1114 Lipopolysaccharide biosynthesis protein (Sphingobium sp. HT1-2)
MSGPGLGRAVRSGMAWSILESWGVQLLQFLTFLVIARYVDATMLGIVAMALLVGQWFQMI
ILSGISASLVSKGGAADADLDDTAFWISAATGALLLIATFLLADLVELTAAHQGLGMVLR
WLSVANFLGALNVVPQAWLTRALLMRPLATRSTISTLVGGLVGIALAVAGYGVMALVAQN
LAVAVIGTIILWAACPMRPRLRFSREKARDVLFYGRHVGVTGAANFFNANADIMVIGLAL
GGAATGIYTVGKRALLAANLMLARALSRVALPVFSQLKGDPPRLAKAFLRIVSATSSITT
PAFVGLAIVSDEFIFLLFGPHWAAAADVMRYLSLFGALQAIGIYNQSLMLAMGKPQWQTW
LAGIYALVNIVTFFFAVEYGMAAVAAAFTARAYILYPLSVWPVVVLLPLGWRDYWKALRP
SVVASLVMAVFLWGFRFALAGQAPIPMLLSTVIAGAAVYMVVLGLVGRTIVIDMFHFARA
GGKRVSSTS