Protein Info for GFF1106 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: FIG01200701: possible membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13462: Thioredoxin_4" amino acids 100 to 248 (149 residues), 41 bits, see alignment E=3.4e-14 PF01323: DSBA" amino acids 113 to 154 (42 residues), 31.9 bits, see alignment 1.8e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to see:SNSL254_A0030)

Predicted SEED Role

"FIG01200701: possible membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (281 amino acids)

>GFF1106 FIG01200701: possible membrane protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MYYHALKLSRLAMLTLAGVAVSASAIAADSAPTSQIGPTAEAYIVSHPDKVGEVVATYLA
EHPEFLVAASETLHQRQQIAQQQAYVQLALQYRAELLSSSSPSVGPNEAKAAVVMFFDYQ
CSWCSKMAPVVENLIKANPDTRFIFKEFPIFSSRWPVSGLAARVGEQVWLTQGGAKYLDW
HNALYATGKVEGALTEHDVYTLAQHYLTPTQLAAVKEAQSSGAVHDALLTNQALAQHMDF
SGTPAFVVMPQTQDGDVKRVTVIPGSTTQDMLQMAIQKAKG