Protein Info for GFF11 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 520 PF03354: TerL_ATPase" amino acids 43 to 212 (170 residues), 94.9 bits, see alignment E=5e-31 PF20441: TerL_nuclease" amino acids 225 to 503 (279 residues), 103.8 bits, see alignment E=1e-33

Best Hits

Predicted SEED Role

"Phage terminase, large subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (520 amino acids)

>GFF11 hypothetical protein (Sphingobium sp. HT1-2)
MLDDFDRSDITFAVKYINHACAFVEALVHIKGQWAGQPIRLEPFQVWIIANIFGWVRKSD
GLRRFRSAFVLLPRKSGKSLIAAAIALYMTFADGEPGAEGYTGASNLAQANEVFTPAKRM
AELSPHFLETFGVEVMAKSVFCEATGQSFVPVIAKTKDGSSPHLAICDELHQAIDDTQIQ
AFRTGMGARRQPLLLVISTAGTNLAGVCRTEQLAAEAVLRGGSIDDKLFAAIWTIDADDD
WRDFDSWIKANPAIGASLSEEFLRDKLNEALQSPAKAAAARTKHLNEWVASAAGWLNQND
WANAADPTLDIMALAGRPAFLAADLSTKQDLTSINAAVPLDDGRLAIFPWCMAPEGAVTN
SPNSSAYAEWVERGDLIQTPGSASSFAEAEERLEWLRQHFDVKVAVFDQWQGEAVRQRYE
AAGVPTMIWQANNRGAWTMAMDDFEADLKNGLVVHPGNAVLDWCAANICASTRGVTRIPV
KPSGQDHLKIDAMVATIMAYAAASVEPPPARADIALEFWD